2004 Publications

Listings in bold are results of collaborations within the UC SBRP.  Italicized listings include collaborative efforts with investigators who will join the UC SBRP in 2006.

B'Hymer, C., and J. A. Caruso. 2004. Arsenic and its speciation analysis using high-performance liquid chromatography and inductively coupled plasma mass spectrometry. J Chromatogr A 1045(1-2): 1-13.

Bahassi el, M., S. Karyala, C. R. Tomlinson, M. A. Sartor, M. Medvedovic, and R. F. Hennigan. 2004. Critical regulation of genes for tumor cell migration by AP-1. Clin Exp Metastasis 21(4): 293-304.

Barnes-Ellerbe, S., K. E. Knudsen, and A. Puga. 2004. 2,3,7,8-Tetrachlorodibenzo-p-dioxin blocks androgen-dependent cell proliferation of LNCaP cells through modulation of pRB phosphorylation. Mol Pharmacol 66(3): 502-511.

Bishop, P. L. 2004. PAH transport and bioremediation in Superfund soils.  Presented at the NIEHS Superfund Basic Research Program Annual Meeting, Seattle, WA, November, 3-4.

Bishop, P. L. 2004. Use of microelectrodes and MEMS devices in environmental research.  Presented at the Progress in Biological Treatment Processes, A mini Symposium in Honor of C.P.L Grady, Jr, Clemson University, Clemson, SC, February 20.

Bishop, P. L., T. C. Keener, A. R. Kukreti, and S. T. Kowel. 2004. The ACCEND program: a combined BS and MS program in environmental engineering that includes co-operative work experience. Water Sci Technol 49: 73-9.

Dixon, K., and E. Kopras. 2004. Genetic alterations and DNA repair in human carcinogenesis. Semin Cancer Biol 14(6): 441-448.

Estes, C., S. Kann, J. F. Reichard, M. Y. Huang, M. Sartor, S. Schwemberger, Y. Chen, T. P. Dalton, H. G. Shertzer, Y. Xia, and A. Puga. 2004. Tert-butylhydroquinone protects cells genetically deficient in glutathione biosynthesis from arsenite-induced apoptosis without significantly changing their prooxidant status. Submitted to Carcinogenesis.

Evans, C. D., K. LaDow, B. L. Schumann, R. E. Savage, Jr., J. Caruso, A. Vonderheide, P. Succop, and G. Talaska. 2004. Effect of arsenic on benzo[a]pyrene DNA adduct levels in mouse skin and lung. Carcinogenesis 25(4): 493-497.

Gong, P., and P. L. Bishop. 2004. The impact of cadmium and environmental factors on naphthalene removal by a multi-species biofilm.  Presented at the Poster Presentation, NIEHS Superfund Basic Research Program Annual Meting, Seattle, WA, November 3-4.

Grant, T. D., M. Montes-Bayon, D. LeDuc, M. W. Fricke, N. Terry, and J. A. Caruso. 2004. Identification and characterization of Se-methyl selenomethionine in Brassica juncea roots. J Chromatogr A 1026(1-2): 159-166.

Grant, T. D., R. G. Wuilloud, J. C. Wuilloud, and J. A. Caruso. 2004. Investigation of the elemental composition and chemical association of several elements in fulvic acids dietary supplements by size-exclusion chromatography UV inductively coupled plasma mass spectrometric. J Chromatogr A 1054(1-2): 313-319.

Guo, J., M. Sartor, S. Karyala, M. Medvedovic, S. Kann, A. Puga, P. Ryan, and C. R. Tomlinson. 2004. Expression of genes in the TGF-beta signaling pathway is significantly deregulated in smooth muscle cells from aorta of aryl hydrocarbon receptor knockout mice. Toxicol Appl Pharmacol 194(1): 79-89.

Jin, P., and P. L. Bishop. 2004. Cadmium transfer and distribution in a multi-species biofilm and the impact on naphthalene removal.  Presented at the Biofilms 204, Las Vegas, NV, October 24-26.

Jing, G., G. Hollis, A. Polaczyk, H. B. Eluru, B. Kinkle, D. Mast, D. B. Oerther, and I. Papautsky. 2004. Developing rapid detection of mycobacteria using microwaves. Analyst 129(10): 963-969.

Kann, S., M. Y. Huang, C. Estes, J. F. Reichard, M. Sartor, Y. Xia, and A. Puga. 2004. Arsenite induces aryl hydrocarbon receptor nuclear translocation but has a limited effect on receptor-dependent transactivation. Toxicological Sciences.

Kannamkumarath, S. S., K. Wrobel, K. Wrobel, and J. A. Caruso. 2004. Speciation of arsenic in different types of nuts by ion chromatography-inductively coupled plasma mass spectrometry. J Agric Food Chem 52(6): 1458-1463.

Kannamkumarath, S. S., R. G. Wuilloud, and J. A. Caruso. 2004. Studies of various elements of nutritional and toxicological interest associated with different molecular weight fractions in Brazil nuts. J Agric Food Chem 52(19): 5773-5780.

Kannamkumarath, S. S., R. G. Wuilloud, S. Jayasinghe, and J. A. Caruso. 2004. Fast speciation analysis of iodophenol compounds in river waters by capillary electrophoresis-inductively coupled plasma-mass spectrometry with off-line solid-phase microextraction. Electrophoresis 25(12): 1843-1851.

Kannamkumarath, S. S., R. G. Wuilloud, A. Stalcup, J. Caruso, H. Patel, and A. Sakr. 2004. Determination of levothyroxine and its degradation products in pharmeceutical tablets by HPLC-UV-ICP-MS. Journal of Atomic Analytical Spectrometry 19(1): 107-113.

Karyala, S., J. Guo, M. Sartor, M. Medvedovic, S. Kann, A. Puga, P. Ryan, and C. R. Tomlinson. 2004. Different global gene expression profiles in benzo[a]pyrene- and dioxin-treated vascular smooth muscle cells of AHR-knockout and wild-type mice. Cardiovasc Toxicol 4(1): 47-73.

Kopras, E.  2004  The Superfund Basic Research Program in Cincinnati.  Interface, Genes and the Environment, Issue 27, 1-4.

Kupferle, M., A. Galal, and P. L. Bishop. 2004. Electrolytic treatment of azo dyes containing o,o'-dihydroxyazo complexation sites. Journal of Environmental Engineering and Science 3: 223-229.

Larson, J. S., S. L. Stringer, and J. R. Stringer. 2004. Impact of mismatch repair deficiency on genomic stability in the maternal germline and during early embryonic development. Mutat Res 556(1-2): 45-53.

LeDuc, D. L., A. S. Tarun, M. Montes-Bayon, J. Meija, M. F. Malit, C. P. Wu, M. AbdelSamie, C. Y. Chiang, A. Tagmount, M. deSouza, B. Neuhierl, A. Bock, J. Caruso, and N. Terry. 2004. Overexpression of selenocysteine methyltransferase in Arabidopsis and Indian mustard increases selenium tolerance and accumulation. Plant Physiol 135(1): 377-383.

Lee, J.-H., R. Myers, A. Jang, F. Beyette, W. Timmons, P. L. Bishop, and I. Papautsky. 2004. Potentiometric microelectrode sensors for in situ environmental monitoring.  Presented at the Third IEEE International Conference on Sensers, Vienna, Austria, October 24-27.

Li, B., and P. L. Bishop. 2004. Oxidation-reduction potential changes in aeration tanks and microprofiles of activated sludge floc in medium- and low-strength wastewaters. Water Environ Res 76(5): 394-403.

Li, J., and P. L. Bishop. 2004. Adsorption and biodegradation of azo dye in biofilm processes. Water Sci Technol 49(11-12): 237-245.

Li, J., and P. L. Bishop. 2004. Time course observations of nitrifying/denitrifying biofilm development using microelectrodes. Journal of Environmental Engineering and Science 3: 523-528.

Lee, J.-H., P. Bhadri, A. Jang, S. Alla, A. Das, F. Beyette, W. Timmons, P. L. Bishop, and I. Papautsky. 2004. Presented at the 13th International conference on solid state Sensors, Actuators and Microsystems, Seoul, Korea, December 2004.

Medvedovic, M., K. Y. Yeung, and R. E. Bumgarner. 2004. Bayesian mixture model based clustering of replicated microarray data. Bioinformatics 20(8): 1222-1232.

Meija, J., T. L. Beck, and J. A. Caruso. 2004. Interpretation of alkyl diselenide and selenosulfenate mass spectra. J Am Soc Mass Spectrom 15(9): 1325-1332.

Meija, J., and J. A. Caruso. 2004. Deconvolution of isobaric interferences in mass spectra. J Am Soc Mass Spectrom 15(5): 654-658.

Meija, J., and J. A. Caruso. 2004. Selenium and sulfur trichalcogenides from the chalcogenide exchange reaction. Inorg Chem 43(23): 7486-7492.

Meija, J., M. Montes-Bayon, J. A. Caruso, D. L. Leduc, and N. Terry. 2004. Speciation of volatile selenium species in plants using gas chromatography/inductively coupled plasma mass spectrometry. Se Pu 22(1): 16-19.

Meija, J., S. Mounicou, and J. A. Caruso. 2004. Plasma spectrometry for elemental speciation and characterization in beverages. J AOAC Int 87(1): 205-224.

Montes-Bayon, M., J. Meija, D. LeDuc, N. Terry, and J. Caruso. 2004. HPLC-ICP-MS AND ESQTOF Analysis of Biomolecules included in Brassica juncea during arsenic accumulation. J. Anal. At Spectrom 19: 153-158.

Mounicou, S., J. Meija, and J. Caruso. 2004. Preliminary studies on selenium-containing proteins in Brassica juncea by size exclusion chromatography and fast protein liquid chromatography coupled to ICP-MS. Analyst 129(2): 116-123.

Popa, R., and B. K. Kinkle. 2004. Isolation of Thiomonas thermosulfatus strain 51, a species capable of coupling biogenic pyritization with chemiosmotic energy transduction. Geomicrobiology Journal 21(4): 297-309.

Popa, R., and B. K. Kinkle. 2004. Pyrite framboids as biomarkers for iron-sulfur systems, Badescu A. Geomicrobiology Journal 21(3): 193-206.

Puga, A., M. A. Sartor, M. Y. Huang, J. K. Kerzee, Y. D. Wei, C. R. Tomlinson, C. S. Baxter, and M. Medvedovic. 2004. Gene expression profiles of mouse aorta and cultured vascular smooth muscle cells differ widely, yet show common responses to dioxin exposure. Cardiovasc Toxicol 4(4): 385-404.

Richardson, D. D., S. S. Kannamkumarath, R. G. Wuilloud, and J. Caruso. 2004. A novel hydride generation interface for speciation analysis coupling capillary electrophoresis to inductively coupled plasma mass. Anal Chem 76: 7137-7142.

Robison, J. G., J. Elliott, K. Dixon, and G. G. Oakley. 2004. Replication protein A and the Mre11.Rad50.Nbs1 complex co-localize and interact at sites of stalled replication forks. J Biol Chem 279(33): 34802-34810.

Rodriguez, D. M., K. Wrobel, M. G. Jimenez, and K. Wrobel. 2004. Determination of 2-mercaptobenzothiazole (MBT) in tannery wastewater by high performance liquid chromatography with amperometric detection. Bull Environ Contam Toxicol 73(5): 818-824.

Rodriguez, S., and P. L. Bishop. 2004.  Biofilm growth, structure and composition during in situ bioremediation of naphthalene.   Presented at the Fourth International Conference on Remediation of Chlorinated and Recalcitrant Compounds, Battelle, Monterey, CA, May 24-27.

Rodriguez, S., and P. L. Bishop. 2004. Competitive metabolism of polycyclic aromatic hydrocarbon(PAH) mixtures in porous media biofilms. Biofilms.

Rodriguez, S., and P. L. Bishop. 2004.  Multistage polycyclic aromatic hydrocarbon in porous media biofilms.  Presented at the NIEHS, Superfund Basic Research Program Annual Meeting, Seattle, WA, Nomber 3-4.

Sadi, B. B., A. P. Vonderheide, and J. A. Caruso. 2004. Analysis of phosphorus herbicides by ion-pairing reversed-phase liquid chromatography coupled to inductively coupled plasma mass spectrometry with octapole reaction cell. J Chromatogr A 1050(1): 95-101.

Saikaly, P. E., and D. B. Oerther. 2004. Bacterial competition in activated sludge: theoretical analysis of varying solids retention times on diversity. Microb Ecol 48(2): 274-284.

Sartor, M., J. Schwanekamp, D. Halbleib, I. Mohamed, S. Karyala, M. Medvedovic, and C. R. Tomlinson. 2004. Microarray results improve significantly as hybridization approaches equilibrium. Biotechniques 36(5): 790-796.

Seo, Y., and P. L. Bishop. 2004. Development of mulch biofilms barriers for polycyclic aromatic hydrocarbon contaminated ground water.  Presented at the NIEHS Superfund Basic Research Program Annual Meeting, Seattle, WA, November 3-4.

Shah, M., S. S. Kannamkumarath, J. C. Wuilloud, R. G. Wuilloud, and J. Caruso. 2004. Identification and characterization of selenium species in enriched green onion(Allium fistulosum) by HPLC-CP-MS and ESI-ITMS. J. Anal. At. Sprectrom 19: 381-386.

Sonntag, D. M., J. de Boer, M. Medvedovic, C. S. Baxter, G. LeMasters, and G. Talaska. 2004. Mutational biases associated with potential iron-binding DNA motifs in rodent lacI and human p53 mutational databases. Mutat Res 550(1-2): 73-88.

Stringer, J. R., J. S. Larson, J. M. Fischer, and S. L. Stringer. 2004. Increased mutation in mice genetically predisposed to oxidative damage in the brain. Mutat Res 556(1-2): 127-134.

Szabo, J., and P. L. Bishop. 2004. Interaction of drinking water distribution system biofilm with pathogenic biological agents. Presented at the Perspectives on Biodefense Symposium, Cincinnati, OH 29-30.

Tan, Z., M. Huang, A. Puga, and Y. Xia. 2004. A critical role for MAP kinases in the control of Ah receptor complex activity. Toxicol Sci 82(1): 80-87.

Vineis, P., P. A. Schulte, T. Carreon, A. J. Bailer, and M. Medvedovic. 2004. Issues of design and analysis in studies of gene-environment interactions. IARC Sci Publ 157: 417-435.

Vonderheide, A. P., J. Meija, K. Tepperman, A. Puga, A. R. Pinhas, J. C. States, and J. A. Caruso. 2004. Retention of Cr(III) by high-performance chelation ion chromatography interfaced to inductively-coupled plasma mass spectrometric detection with collision cell. J Chromatogr A 1024(1-2): 129-137.

Wei, Y. D., K. Tepperman, M. Y. Huang, M. A. Sartor, and A. Puga. 2004. Chromium inhibits transcription from polycyclic aromatic hydrocarbon-inducible promoters by blocking the release of histone deacetylase and preventing the binding of p300 to chromatin. J Biol Chem 279(6): 4110-4119.

Wilburn, R. T., A. P. Vonderheide, R. S. Soman, and J. A. Caruso. 2004. Speciation of selenium in the mushroom Boletus edulis by high-performance liquid chromatography coupled to inductively coupled plasma-mass spectrometry with a collision cell. Appl Spectrosc 58(10): 1251-1255.

Wuilloud, J. C., S. R. Gratze, B. M. Gamble, and K. A. Wolnik. 2004. Simultaneous analysis of hepatotoxic pyrrolizidine alkaloids and N-oxides in comfrey root by LC-ion trap mass spectrometry. Analyst 129(2): 150-156.

Wuilloud, J. C., R. G. Wuilloud, A. Vonderheide, and J. Caruso. 2004. Gas chomatography/plasma spectrometry – an important analytical tool for elemental speciation studies. Spectrochimica Acta Part B: Atomic Spectroscopy.

Wuilloud, R. G., S. S. Kannamkumarath, and J. Caruso. 2004. Speciation of essential and toxic elements in edible mushrooms:SEC separation with on-line UV-ICP-MS detection. Applied Organometallic Chemistry 18: 156-165.

Wuilloud, R. G., S. S. Kannamkumarath, and J. A. Caruso. 2004. Multielemental speciation analysis of fungi porcini (Boletus edulis) mushroom by size exclusion liquid chromatography with sequential on-line UV-ICP-MS detection. J Agric Food Chem 52(5): 1315-22.

Wuilloud, R. G., S. S. Kannamkumarath, and J. A. Caruso. 2004. Speciation of nickel, copper, zinc, and manganese in different edible nuts: a comparative study of molecular size distribution by SEC-UV-ICP-MS. Anal Bioanal Chem 379(3): 495-503.

Wuilloud, R. G., N. Selar, S. S. Kannamkumarath, and J. Caruso. 2004. Highly determination of 2,3,6-trinitrophenol and its metabolites in human urine by fast anion-exhange chromatography –ICP-MS. J. Anal. At 19: 1442-1447.

Yeung, K. Y., M. Medvedovic, and R. E. Bumgarner. 2004. From co-expression to co-regulation: how many microarray experiments do we need? Genome Biol 5(7): R48.

Yu, T., C. de la Rosa, and R. Lu. 2004. Microsensor measurement of oxygen concentration in biofilms: from one dimension to three dimensions. Water Sci Technol 49(11-12): 353-358.

Zhang, J., A. Moseley, A. G. Jegga, A. Gupta, D. P. Witte, M. Sartor, M. Medvedovic, S. S. Williams, C. Ley-Ebert, L. M. Coolen, G. Egnaczyk, M. B. Genter, M. Lehman, J. Lingrel, J. Maggio, L. Parysek, R. Walsh, M. Xu, and B. J. Aronow. 2004. Neural system-enriched gene expression: relationship to biological pathways and neurological diseases. Physiol Genomics 18(2): 167-183.

2003

Baki B.M. Sadi, Anne P. Vonderheidea, J. Sabine Beckera, Joseph A. Caruso, “SEC-ICP-MS: An Important Analytical Tool for Elemental Speciation in Environmental and Biological Samples,” submitted to the American Chemical Society as a review chapter for a review book on Size Exclusion Chromatography; expected publication, December 2003.

Bishop, P., “The effect of biofilm heterogeneity on metabolic processes, Biofilms in Wastewater Treatment: An Interdisciplinary Approach, Wuertz, S., Bishop, P. and Wilderer, P., ed., IWA Publishing, London, pp. 125-146, 2003.

Bishop, P. and Wuertz, S., “Modeling and simulation: Concluding remarks,” Biofilms in Wastewater Treatment: An Interdisciplinary Approach, Wuertz, S., Bishop, P. and Wilderer, P., ed., IWA Publishing, London, pp. 118-120, 2003.

J. A. Caruso, B. Klaue, B. Michalke and D. M. Rocke, “Elemental Speciation,” Ecotoxicology and Environmental Safety. 56, 3- 452 (2003).

Cheung, P.-Y., and B.K. Kinkle. 2004. Mycobacterium population changes and pyrene mineralization in nutrient and surfactant-amended soils. FEMS Microbiol. Ecol. (in press)

Cheung, P.-Y., and B.K. Kinkle. 2004. Mycobacterium population changes and acclimation of pyrene mineralization in polycyclic aromatic hydrocarbon-amended soils. Soil Biol. Biochem. (In press)

R. Cornelis, editor-in-chief, J. A. Caruso, H. Crews and K. Heumann, associate editors of Handbook of elemental speciation, an invited two volume series estimated to be 650 pages per volume; Volume I – July 2003, John Wiley and Sons.

Coughlin, M.F., B.K. Kinkle, and P.L. Bishop. 2003. High performance degradation of azo dye Acid Orange 7 and sulfanilic acid in a laboratory scale reactor after seeding with cultured bacterial strains. Water Research 37:2757-2763.

Frink, P.J., A.P. Vonderheide, and J. Shann. Co-accumulation of trace metals in Brassica Juncea grown in fly-ash treated soils. Journal of Environmental Quality. [submitted]

Frink, P.J., A.P. Vonderheide, and J. Shann. Using Brassica Juncea to alleviate selenium phytotoxicity. Journal of Environmental Quality. [submitted]

Gillam, D.E., Bishop, P.L., Rhodes, R. and Love, N.G., “Adaptation of subsurface microbial communities in response to electrophilic chemical stressors,” Proceedings, IWA Biofilm Congress, Cape Town, South Africa, September 14-17, 2003.

Tyre D. Grant, María Montes-Bayón,, Danika LeDuc, Michael W. Fricke, Norman Terry and Joseph A. Caruso, “Identification and characterization of Se-methyl-Se-methionine in Brassica juncea roots, accepted by J. Chrom. A (2003).
Jang, A., Okabe, S., Ito, T., Watanabe, Y. Kim, I. And Bishop, P.L., “Measurement of growth rate of Nitrosomonas europaea in partially submerged rotating biological contactor by fluorescent in situ hybridization (FISH), Water Environment Research (submitted).

Jang, A., Yoon, Y-H, Kim, I.S. and Bishop, P.L., “Development and evaluation of aerobic granules in sequencing batch reactor, Journal of Biotechnology, (accepted).

Jang, A., Seo, Y-W and Bishop, P.L., “The removal of heavy metals in urban runoff by sorption on mulch, Environmental Pollution, (submitted).

Jjemba, P.K., B.K. Kinkle, and J.R. Shann. In situ enumeration and identification of pyrene-degrading soil bacteria. Biotechnologica (Submitted)

Sasi S. Kannamkumarath, Rodolfo G. Wuilloud, Apryll Stalcup, Himanshu Patel, Adel Sakr and Joseph A. Caruso, “Speciation analysis of levothyroxine degradation products in pharmaceutical tablets by HPLC-UV-ICP-MS,” Submitted to J. Anal. At. Spectrom. Aug. (2003).

Kupferle, M. Galal, A. and Bishop, P.L., “Electrolytic treatment of azo dyes containing o,o’-dihydroxyazo complexation sites,” Journal of Environmental Engineering and Science (accepted).

Kupferle, M. Galal, A. and Bishop, P.L., “The impact of dye structure on the rate of color removal during electrolytic treatment of azo dyes containing o,o’-dihydroxyazo complexation sites,” Water Research (submitted).

Kupferle, M. and Bishop, P.L. “Measurement of color in wastewaters containing dyes,” Water Research (submitted).

Li, B., Oerther, D. and Bishop, P.L., “Correlating the spatial organization of nitrifier biomass with chemical microenvironments in activated sludge floc, Water Environment Research, (submitted).

Li, J. and Bishop, P.L., “Time course observations of nitrifying/denitrifying biofilm development using microelectrodes,” Journal of Environmental Engineering (submitted).

Li, J. and Bishop, P.L., “Monitoring the influence of toxic compounds on microbial denitrifying biofilm processes,” Water Science and Technology, 47(5): 211-216, 2003.

Li, J. and Bishop, P.L., “Adsorption and biodegradation of azo dye in biofilm processes,” IWA Biofilm Congress, Cape Town, South Africa, September 14-17, 2003.

Li, J. and Bishop, P.L., “Adsorption and biodegradation of azo dye in biofilm processes,” Water Science & Technology, (accepted).

Medvedovic, M., Yeung, K.Y., Bumgarner, R.E. Bayesian Mixtures for Clustering Replicated Microarray Data. Bioinformatics (In Press) 2003.

J. Meija, J. Bryson, A. Vonderheide, M. Montes-Bayon and J. A. Caruso, “Studies of selenium containing volatiles in roasted coffee,” J. Agricultural and Food Chem. 51, 5116 – 5122 (2003).

J. Meija, T. L. Beck and J. A. Caruso, “Ínterpretation of alkyldiselenide and selenosulfenate mass spectra,”submitted to J. Amer. Soc. Mass Spec. (2003).

María Montes-Bayón1, Katie DeNicola, Joseph A. Caruso, “Liquid Chromatography-Inductively Coupled Plasma Mass Spectrometry,” J. Chrom. A, 1000 – 100 Years of Chromatography special issue, 457 – 476 (2003).

Maria Montes-Bayón and Joseph A. Caruso, Elemental Speciation Studies, “New Directions for Trace Metal Analysis. Ecotoxicology and Environmental Safety, 56, 148 – 164 (2003).

C. Ponce de Leon, M. Montes-Bayon, K. DeNicola and J. A. Caruso, “Sequential extractions of selenium soils: total selenium and speciation measurements with ICP-MS detection, J. Environ. Mon. 5, 435 – 440 (2003).

Rhodes, R., Chakraborty, I., Stevens, A., Love, N., Gillam, D. and Bishop, P.L., Subsurface microbial adaptation to chemical stressors,” 19th Annual International Conference on Soils, Sediments and Water, Amherst, MA, October 20-23, 2003.

Rodriguez, S. and Bishop, P.L., “Characterization of soil biofilms for the degradation of polycyclic aromatic hydrocarbons,” Proceedings, IWA Biofilm Congress, Cape Town, South Africa, September 14-17, 2003.

Rodriguez, S. and Bishop, P.L., “Biofilm growth, structure and composition during in-situ bioremediation of naphthalene,” Fourth International Conference on Remediation of Chlorinated and Recalcitrant Compounds, Battelle, Monterey, CA, May 24-27, 2004 (accepted).

Monika Shah, Sasi S. Kannamkumarath, Jorgelina C.A. Wuilloud, Rodolfo G. Wuilloud, and Joseph A. Caruso, “Identification and characterization of selenium species in enriched green onion (Allium fistulosum) by HPLC-ICP-MS and ESI-ITMS”, to be submitted.

Alice S. Tarun, Danika LeDuc, Maria Montes-Bayon, J. Meija, Michele F. Malit, Carol Wu, Manal AbdelSamie, Edward Chiang, Abderrahmane Tagmount, Mark deSouza, Bernhard Neuhierl, August Böck, Joseph Caruso and Norman Terry , “Overexpression of Selenocysteine Methyltransferase in Arabidopsis thaliana and Brassica juncea: Increases in Selenium Tolerance and Accumulation,” accepted by Plant Physiol., Sept. 2003.

Anne P. Vonderheide, Juris Meija, Katherine Tepperman, Alvaro Puga, Allan R. Pinhas, J. Christopher States and Joseph A. Caruso, “Retention of Cr(III) by High-Performance Chelation Ion Chromatography Interfaced to Inductively-Coupled Plasma-Mass Spectrometric Detection with Collision Cell,” accepted by J. Chrom. A. (2003)

A. Vonderheide, J. Meija, M. Montes-Bayon, and J. A. Caruso, “Use Of Optional Gas And Collision Cell For Enhanced Sensitivity Of The Organophosphorus Pesticides By Gc-Icp-Ms”, J. Anal. At. Spectrom, 18, 1097 - 1102 (2003).

Wei, Y.-D., Tepperman, K., Sartor, M.A. and Puga, A. Chromium inhibits transcription from PAH_inducible promoters by blocking the release of HDAC and preventing the binding of p300 to chromatin. In press J. Biol. Chem.

K. Wrobel, K. Wrobel, S. Kannamkumarath, and J. A. Caruso, “Hydrolysis of proteins with methanesulfonic acid for improved HPLC-ICP-MS determination of seleno methionine in yeast and nuts.” Analytical and Bioanalytical Chemistry, 375, 133 – 138 (2003).

K. Wrobel, B. B. M. Sadi, K. Wrobel, J. S. Castillo and J. A. Caruso, “Effect of metal ions on the molecular weight distribution of humic substances derived from municipal compost: ultrafiltration and SEC with spectrophotometric and ICP-MS detection,” Anal. Chem. 75, 761 - 767 (2003).

K. Wrobel, K. Wrobel, S. Kannamkumarath and J. A. Caruso, “Environmentally friendly sample treatment for speciation analysis by hyphenated techniques,” Green Chemistry, 5, 250 – 259 (2003).

Katarzyna Wrobel, Sasi Kannamkumarath, Kazimierz Wrobel, and Joseph A. Caruso, Different Environmental Aspects Of Trace Element Speciation Analysis By Hyphenated Techniques, a book chapter for "Green Chemistry: Environment friendly Alternatives", Rashmi Sanghi an M. M. Srivastava, eds. Narosa, Kanpur, India, (2003).

J. Wuilloud, R. Wuilloud, B. B. Sadi and J. A. Caruso, “Trace humic and fulvic acids determination in natural water by cloud point extraction/ preconcentration using non-ionic and cationic surfactants and a FI-system with spectrophotometric detection,” The Analyst, 128, 453 - 458 (2003).

Katarzyna Wróbel, Kazimierz Wróbel, Sasi S. Kannamkumarath, Irena A. Wysocka, Ewa Bulska, Justyna. Świątek, Małgorzata Wierzbicka and Joseph A. Caruso, accepted Food Chemistry, (2003).

Kazimierz Wrobel, Katarzyna Wrobel, Sasi S. Kannamkumarath, Joseph A. Caruso, “Identification of selenium species in urine by ion-pairing HPLC-ICP-MS using laboratory-synthesized standards”, Anal. Bioanal. Chem. (2003) in press.

Rodolfo G. Wuilloud, Sasi S. Kannamkumarath, and Joseph A. Caruso, “Speciation of essential and toxic elements in edible mushrooms: SEC separation with on-line UV-ICP-MS detection” submitted to Applied and Organometallic Chemistry (2003).

Rodolfo G. Wuilloud, Jorgelina C. A. de Wuilloud, Anne P. Vonderheide, and Joseph A. Caruso, “Determination of iodinated phenol species at parts-per-trillion concentration levels in different water samples by solid-phase microextraction/offline GC-ICP-MS,” accepted J. Anal. At. Spectrom. 18, 1119 - 1124 (2003).

Rodolfo G. Wuilloud, Sasi S. Kannamkumarath, and Joseph A. Caruso, “Multielemental speciation analysis of Fungi Porcini (Boletus Edulis) mushroom by size-exclusion liquid chromatography with sequential on-line UV-ICP-MS detection”, to be submitted.

Rodolfo G. Wuilloud and Jorgelina C. A. Wuilloud, “Analytical Methodologies For Speciation Of Halogen Compounds”, a book chapter for "Handbook of Elemental Speciation”, Vol. 2, edited by Rita Cornelis, Klaus Heumann, Joseph Caruso, and Helen Crews, in press.

Yeung, K.Y., Medvedovic, M. Bumgarner, R.E. Clustering Gene Expression Data With Repeated Measurements. Genome Biology 4(5): R34. 2003

Yoshitomi, K, and J.R. Shann. Changes in soil microbial communities under the influence of plant root exudates. Soil Biology & Biochemistry. [accepted in 03, publication delayed due to high journal volume]

Yu, T. and Bishop, P.L., “The fabrication and evaluation of an oxidation-reduction potential microelectrode,” Water Environment Research (submitted).

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